PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0076s0270.3.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 330aa MW: 35269.9 Da PI: 8.2697

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0076s0270.3.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22	2.9e-07	1	18	10	27
GGTS--TTTTT-SS-SSS CS zf-CCCH 10 artGtCkyGdrCkFaHgp 27 + t Ck+G++CkF H++ Kaladp0076s0270.3.p 1 MTTNNCKFGASCKFDHPK 18 67899***********96 PP
2	zf-CCCH	37.1	5.2e-12	37	62	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++f rtG+Ck+G++CkF H++ Kaladp0076s0270.3.p 37 GEKECSYFVRTGQCKFGATCKFDHPQ 62 7899********************97 PP
3	zf-CCCH	24.3	5.6e-08	207	231	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++Cr+++++G+CkyG +Ck+ H+ Kaladp0076s0270.3.p 207 DQPECRNYFKYGYCKYGFSCKYRHP 231 689*******************998 PP
4	zf-CCCH	24.9	3.6e-08	254	276	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + C ++a G Ck+G++CkF+H Kaladp0076s0270.3.p 254 VPYCTNYAHQGVCKFGSSCKFNH 276 578******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MTTNNCKFGA SCKFDHPKHD GETKICLNYL GYPLRPGEKE CSYFVRTGQC KFGATCKFDH 60 PQPVHSHVST ATLTPGDASA PLPPKSNTQV HPPPTPAPQP YGVITGNWQV PRTPIFLPAP 120 YPCIQGTYGP TFLQPGVFSM PSWGPYPIQM SPVVSPRIQP PIGSGPRYDM SHLSAPASPY 180 AGPYPLIPTA GAFSIIQKEP ILSERPDQPE CRNYFKYGYC KYGFSCKYRH PSEVNASKPT 240 PPHGTTEPPL RAGVPYCTNY AHQGVCKFGS SCKFNHQTGA GTLSYSPSAS SLADLPVAPC 300 PLECSVGTTA PSSSSSEPEI ASGSAKESA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-66	C3H family protein