PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0081s0349.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 498aa    MW: 54293.7 Da    PI: 4.9747
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0081s0349.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.71.9e-13170193326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           e C+f+++tG CkyG +CkF+H+
  Kaladp0081s0349.1.p 170 AEDCNFYMKTGSCKYGLSCKFNHP 193
                          689********************9 PP
2zf-CCCH25.62.2e-08217240427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                           +C++++  G CkyG  C+F H++
  Kaladp0081s0349.1.p 217 TECKYYLSAGGCKYGKACRFKHSR 240
                          58********************95 PP
3zf-CCCH34.24.3e-11261285226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++r+G Cky ++C+F+H+
  Kaladp0081s0349.1.p 261 GEKECPYYMRNGSCKYAASCRFNHP 285
                          7899********************9 PP
4zf-CCCH33.38.1e-11384410127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C ff+rtG Cky ++CkF+H++
  Kaladp0081s0349.1.p 384 PGQPECTFFLRTGDCKYRSTCKFHHPK 410
                          5789*********************96 PP
5zf-CCCH24.83.8e-08430455227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C +++ +G+Ck+G++C++ H+p
  Kaladp0081s0349.1.p 430 GQSICTHYRHYGICKFGPKCRYDHPP 455
                          7899********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    
METPEPIPSP DSDQHQPPIH DSQPPLPDPS DDDPKSPPPA PPTEELQAMI LKEDEAPGDG  60
DGDGGRVDGV SERKDEADGG VGGVGGGGSE NEGVAESETG RQGEKEKVEE VVKDGWSDDQ  120
HGRVDGGVEE AGDGYPVDGW SIGNGEGEPD WKEEAQGRDM QVQYPLRPGA EDCNFYMKTG  180
SCKYGLSCKF NHPLRRTNQT VKPRVKERED SSERPMTECK YYLSAGGCKY GKACRFKHSR  240
ETPSVVPVLE YNFLGLPIRP GEKECPYYMR NGSCKYAASC RFNHPDPTAG SDTPSGYAND  300
EHASSWSPSR PSNEVASFVP GSYTSAQGIH PQISEWNGYQ GPVFTAEKSF RLPPAFGLNI  360
PPMAGSGYSH FPSQLASEEF PERPGQPECT FFLRTGDCKY RSTCKFHHPK DRNVQPLCAM  420
TDKGLPLRPG QSICTHYRHY GICKFGPKCR YDHPPNIQQS EASAMTGLGQ PHHPFSNFAS  480
PEDASRLSSM GEGTITL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-113C3H family protein