PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0085s0056.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 291aa MW: 30583.6 Da PI: 9.7394

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0085s0056.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.7	1.7e-07	99	124	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k ++C+ f Ck+Gd+C+FaHg+ Kaladp0085s0056.1.p 99 KSRICNKFNSAEGCKFGDKCHFAHGE 124 5689999999999***********96 PP
2	zf-CCCH	32.1	1.9e-10	257	281	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +f + G C +GdrC+FaHg Kaladp0085s0056.1.p 257 YKTKLCENFGK-GSCTFGDRCHFAHG 281 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MDARKRGRLD SGFNGNGGFK KPKPELDSTG IGSKSKPCTK FFSTSGCPFG EGCHFAHYVP 60 GGYSAVAQMS NMGPAAVPPT RGMTAPPPMK NGSAPPAVKS RICNKFNSAE GCKFGDKCHF 120 AHGEWEIGKP FAPSFDDHRG MGTTTGRGGR MMDPSFPAPP PSGFGVNAST KISVDASLAG 180 AIIGKGGVNS KQICRQTGVK LSIRDHESDP NLRNIELEGS FEQISQASGM VRELIVNVSP 240 MSSAAPTKMR AHASSNYKTK LCENFGKGSC TFGDRCHFAH GAAELRTSTT *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	9e-80	C3H family protein