PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0085s0056.2.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 223aa    MW: 23428.6 Da    PI: 9.4633
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0085s0056.2.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-073156227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         k ++C+ f     Ck+Gd+C+FaHg+
  Kaladp0085s0056.2.p 31 KSRICNKFNSAEGCKFGDKCHFAHGE 56
                         6689999999999***********96 PP
2zf-CCCH32.61.4e-10189213126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykt+lC +f + G C +GdrC+FaHg
  Kaladp0085s0056.2.p 189 YKTKLCENFGK-GSCTFGDRCHFAHG 213
                          9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MSNMGPAAVP PTRGMTAPPP MKNGSAPPAV KSRICNKFNS AEGCKFGDKC HFAHGEWEIG  60
KPFAPSFDDH RGMGTTTGRG GRMMDPSFPA PPPSGFGVNA STKISVDASL AGAIIGKGGV  120
NSKQICRQTG VKLSIRDHES DPNLRNIELE GSFEQISQAS GMVRELIVNV SPMSSAAPTK  180
MRAHASSNYK TKLCENFGKG SCTFGDRCHF AHGAAELRTS TT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-57C3H family protein