PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0085s0105.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 345aa    MW: 38086.4 Da    PI: 7.8133
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0085s0105.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.61.1e-151059250
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50
                         +i  +  r+ +f kR  g+ KK  ELS+LCd+++++ii++ s   l++++
  Kaladp0085s0105.1.p 10 FIATEKARKLSFKKRSDGLVKKTRELSILCDIDACLIIYGgSPMSLRTWP 59
                         6778889*******************************972557899997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MGRGKLTMEF IATEKARKLS FKKRSDGLVK KTRELSILCD IDACLIIYGG SPMSLRTWPE  60
DPKKIDSVLR KCESKRNESS SKHMSLMDFF GNQTCKINEQ IAKTRREMAR AKFAKRIEFG  120
LEGMSVEELR VLAAAVERKT EAVASRIEAE KEKQRMSRGV GALDLVKLGD PQRLDSASQN  180
NLVVANEYHY NAQSYNDYLS ASAPATHHHS KFEKPEPLLP VDVYLPLPPI CDGRFLTQNN  240
YPTDDLMIPM ADYIPAMNGD GYPGGGASGF GQLQAEPHYF QPNLYGLGYP AGSCLAAQQQ  300
QSVLPNLLPG SCQGSNYFQS GDCCCASGEC YCNLFPWQPG KNNG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.29e-15M-type_MADS family protein