PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0085s0142.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 599aa MW: 66871 Da PI: 6.8764

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0085s0142.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	321	335	12	26
TS--TTTTT-SS-SS CS zf-CCCH 12 tGtCkyGdrCkFaHg 26 +G C++Gd+C+F H+ Kaladp0085s0142.1.p 321 SGSCPRGDKCHFVHD 335 7*************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence
MAAPPRILLC GDVLGRLDQL YKRFAAVNKS AGPFDVLLCV GQFFPQSSEQ LDQFMNYVEG 60 RVEIPIATYF IGDFGAGAPK VLTAASKAAQ NQGFKMDGLK ISDNLYWLKG SGKFQLQGLS 120 VAYLSGRRSS IIQPFGTYSQ DDVDALRAMA EEPEIVDIFL TNEWPSGITN KAVESGIPPG 180 VSDSSGFDST VAELVSEIKP RYHVAGTMGV FYAREPYINV DSSHVTRFLG LAPVRNKDKQ 240 KFIHAISPTP ASIMSAVEMC KKPPNASLSP YIDLEKISQA DSETKRPAES DLQYWRYDVS 300 QKRQKTGAGD AERRCFKFVS SGSCPRGDKC HFVHDNDARE QYLRGVCFDF INKGKCEKGS 360 DCSFKHSFQD NAEDVPKMRT GNGKVNRSKE CWFCLSSPNI ESHLIISIGD SFYCALPKGP 420 LLEDHVLVVP IEHAPNTLST PSESETELQK FLSSLKAYYK NLDKEVVWFE WIYRRGTHAN 480 LQVVPIPSSR VSSVKDIFIL AAEKLGFKFK VTESRELLRA QFDANMSLFY VELPCGTVLS 540 HTVDENEKFP AQFGREVLAG LLNMADRADW RKCTSSKEEE MEMASRFKKK FEAYDPNQ*

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence

MAAPPRILLC GDVLGRLDQL YKRFAAVNKS AGPFDVLLCV GQFFPQSSEQ LDQFMNYVEG  60
RVEIPIATYF IGDFGAGAPK VLTAASKAAQ NQGFKMDGLK ISDNLYWLKG SGKFQLQGLS  120
VAYLSGRRSS IIQPFGTYSQ DDVDALRAMA EEPEIVDIFL TNEWPSGITN KAVESGIPPG  180
VSDSSGFDST VAELVSEIKP RYHVAGTMGV FYAREPYINV DSSHVTRFLG LAPVRNKDKQ  240
KFIHAISPTP ASIMSAVEMC KKPPNASLSP YIDLEKISQA DSETKRPAES DLQYWRYDVS  300
QKRQKTGAGD AERRCFKFVS SGSCPRGDKC HFVHDNDARE QYLRGVCFDF INKGKCEKGS  360
DCSFKHSFQD NAEDVPKMRT GNGKVNRSKE CWFCLSSPNI ESHLIISIGD SFYCALPKGP  420
LLEDHVLVVP IEHAPNTLST PSESETELQK FLSSLKAYYK NLDKEVVWFE WIYRRGTHAN  480
LQVVPIPSSR VSSVKDIFIL AAEKLGFKFK VTESRELLRA QFDANMSLFY VELPCGTVLS  540
HTVDENEKFP AQFGREVLAG LLNMADRADW RKCTSSKEEE MEMASRFKKK FEAYDPNQ*