PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0087s0175.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 293aa MW: 30520.7 Da PI: 9.7393

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0087s0175.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.7	1.7e-07	99	124	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k ++C+ f Ck+Gd+C+FaHg+ Kaladp0087s0175.1.p 99 KSRICNKFNSAEGCKFGDKCHFAHGE 124 5689999999999***********96 PP
2	zf-CCCH	32.1	2e-10	258	282	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +f + G C +GdrC+FaHg Kaladp0087s0175.1.p 258 YKTKLCENFGK-GSCTFGDRCHFAHG 282 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MDARKRGRPE AGLNGNGGLK KPKPELDSTG IGSKSKPCTK FFSTAGCPFG EGCHFAHYVP 60 GGYSAVAQLS NMGPAAVPAT RGMVAPPPMK NGSAPPAVKS RICNKFNSAE GCKFGDKCHF 120 AHGEWEIGKP VAPSFDDHRG MGPMAGRGGR LMDPSFPAAP PSGFGVNATT KISVDASLAG 180 AIIGKGGVNS KQICRQTGVK LSIRDHESDP NLRNIELEGS FEQISQASGM VRELIVNVSP 240 MSAAPKSRTP NAAPSSNYKT KLCENFGKGS CTFGDRCHFA HGAAELRTTT TL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	5e-81	C3H family protein