PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0091s0059.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 499aa MW: 55184.7 Da PI: 4.6781

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0091s0059.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.5	4.7e-13	170	194	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 e C++++r+G CkyG +CkF+H+p Kaladp0091s0059.1.p 170 AEDCNYYMRMGSCKYGLSCKFNHPP 194 689********************97 PP
2	zf-CCCH	27	7.8e-09	218	241	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C++++ G CkyG C+F+H++ Kaladp0091s0059.1.p 218 VECKYYLSAGGCKYGKACRFSHSR 241 68********************95 PP
3	zf-CCCH	33.8	5.7e-11	262	286	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G Cky ++C+F+H+ Kaladp0091s0059.1.p 262 GEKECPYYMRNGSCKYAATCRFNHP 286 7899********************9 PP
4	zf-CCCH	33.1	9.2e-11	385	411	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ff++tG Ck+ +rCkF+H++ Kaladp0091s0059.1.p 385 PGQPECTFFLKTGDCKFRSRCKFHHPK 411 5789*********************96 PP
5	zf-CCCH	28.5	2.7e-09	431	456	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++ +G+Ck+G++C++ H+p Kaladp0091s0059.1.p 431 GQSICAHYSNYGICKFGPKCRYDHPP 456 7899********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MEVPEPISTP DSDQRQPLTH GSQSPLPDQL GDDPKSPPPA PLTEEFQAIL NLKEDAAPDA 60 GEDSDGGHVN GVSEQEEEDD VGGVGESQNE TGKDGEMEKA ENGEQEEEIV KDGWSDDQCV 120 RVDGDREEDD SGDGYQVDGW SNGNGVGETE SKEEVQGRDM QLQYPLRPGA EDCNYYMRMG 180 SCKYGLSCKF NHPPRRRNLT LKPRMKERED NSERPMQVEC KYYLSAGGCK YGKACRFSHS 240 RERPTVVPVS EYNFLGLPIR PGEKECPYYM RNGSCKYAAT CRFNHPDPTA GSNSPSGYAN 300 DEQASPWSPS MPSNEAVPFV PASYTSAQGV HSHIYEWKGY QGPAFTAEKS FRPSPAFGLS 360 IPPMERSAYS DFQPQLTSEE FPERPGQPEC TFFLKTGDCK FRSRCKFHHP KDQTVQLSCA 420 MTDKGLPLRP GQSICAHYSN YGICKFGPKC RYDHPPDIQH TPPPAMTGLG HPRNPFSNFT 480 SPEDTSRLSS IGEGTITL*

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MEVPEPISTP DSDQRQPLTH GSQSPLPDQL GDDPKSPPPA PLTEEFQAIL NLKEDAAPDA  60
GEDSDGGHVN GVSEQEEEDD VGGVGESQNE TGKDGEMEKA ENGEQEEEIV KDGWSDDQCV  120
RVDGDREEDD SGDGYQVDGW SNGNGVGETE SKEEVQGRDM QLQYPLRPGA EDCNYYMRMG  180
SCKYGLSCKF NHPPRRRNLT LKPRMKERED NSERPMQVEC KYYLSAGGCK YGKACRFSHS  240
RERPTVVPVS EYNFLGLPIR PGEKECPYYM RNGSCKYAAT CRFNHPDPTA GSNSPSGYAN  300
DEQASPWSPS MPSNEAVPFV PASYTSAQGV HSHIYEWKGY QGPAFTAEKS FRPSPAFGLS  360
IPPMERSAYS DFQPQLTSEE FPERPGQPEC TFFLKTGDCK FRSRCKFHHP KDQTVQLSCA  420
MTDKGLPLRP GQSICAHYSN YGICKFGPKC RYDHPPDIQH TPPPAMTGLG HPRNPFSNFT  480
SPEDTSRLSS IGEGTITL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-110	C3H family protein