PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0093s0005.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27435.2 Da    PI: 9.401
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0093s0005.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.4e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr g++KKA+E+SvLC+aeva+i++s++gkl++y+s
  Kaladp0093s0005.1.p  9 KRIENKINRQVTFSKRRSGLMKKAHEISVLCEAEVALIVYSTKGKLFDYAS 59
                         79***********************************************86 PP
2K-box95.96.1e-32831749100
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          ++ + + s+++++akL+++ie Lqr+qR+l+GedL++Lsl+eLq+Le+qLe++lk+iR kKn+l+ ++i el kk k++qe+n+ L kk+
  Kaladp0093s0005.1.p  83 TDLTSNGSWTHQHAKLQNRIEVLQRNQRNLMGEDLDPLSLRELQNLEHQLENALKHIRLKKNQLMNQSIAELHKKDKAMQEQNNLLGKKI 172
                          44556689*********************************************************************************9 PP

                K-box  99 ee 100
                          +e
  Kaladp0093s0005.1.p 173 KE 174
                          86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLMK KAHEISVLCE AEVALIVYST KGKLFDYASD  60
SSMERILERY ERYSTSDQQL LSTDLTSNGS WTHQHAKLQN RIEVLQRNQR NLMGEDLDPL  120
SLRELQNLEH QLENALKHIR LKKNQLMNQS IAELHKKDKA MQEQNNLLGK KIKEREKALA  180
EHGQLDHQSQ DPSPPPTQTL EPIMRCVDIN RDINQGEGST DQSHPSTALP PWMLGGPTI*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-91MIKC_MADS family protein