PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0094s0095.3.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 692aa MW: 75346.5 Da PI: 6.5069

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0094s0095.3.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.2e-07	278	298	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Kaladp0094s0095.3.p 278 PCPDFRK-GACRRGDMCEYAHG 298 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MNNLSIETED TFGSLLEFAA NNDIEGFKKW IECAPSSIDE VGLWYIRLPG TKQLVLEERT 60 PLMVAATYGS IDVLKLILSS SDADVNRACG NTKSTALHCA ASGGSDNTLE VVKLLLAAGG 120 DPNLADSNGR CPVDVIVVSP KSADLKLSLK QLLAGNGSVS GGNQAKCVPS SNSNNAVVPS 180 SPRNDSPSSA FGSYSLRNAK FEEPTILCGS EKKEYPIDPT FPDIKNSIYG TDEFRMYSFK 240 VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP DFRKGACRRG DMCEYAHGVF 300 ECWLHPAQYR TRLCKDGIDC ARRVCFFAHT TEELRPLYVS TGSAVPSPHS NYSSAMDFAA 360 AMNMLPGSPS SVPVMSPSPF TPPMSPSANG SPSQLSWPPN IPTLNLPGSN LQSSRLRSSI 420 NARDLQAEEF VMMGEADAQQ YQLLKDLTSH YGANSLERPG RLKTPTPLNL EDLFAADNLS 480 PRYVDSPFGS SVHSPTHKSA LLHQFQQQKQ GMISPINTNM SANNVDHHLL QGSYGAYSGR 540 MSPRNVERLE PISPINSRVS MLANREKLRS LSFREPGTNA GALVGSPLSN WGSFSGKLDW 600 ALSSEELDKL RRSSSFDMRN SREDPDSVWA HSPILEPAPE IRERASASGL AIASLTEGMS 660 SSSSNTNTLD HAALGAWLEQ MQLDELMSTS K*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MNNLSIETED TFGSLLEFAA NNDIEGFKKW IECAPSSIDE VGLWYIRLPG TKQLVLEERT  60
PLMVAATYGS IDVLKLILSS SDADVNRACG NTKSTALHCA ASGGSDNTLE VVKLLLAAGG  120
DPNLADSNGR CPVDVIVVSP KSADLKLSLK QLLAGNGSVS GGNQAKCVPS SNSNNAVVPS  180
SPRNDSPSSA FGSYSLRNAK FEEPTILCGS EKKEYPIDPT FPDIKNSIYG TDEFRMYSFK  240
VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP DFRKGACRRG DMCEYAHGVF  300
ECWLHPAQYR TRLCKDGIDC ARRVCFFAHT TEELRPLYVS TGSAVPSPHS NYSSAMDFAA  360
AMNMLPGSPS SVPVMSPSPF TPPMSPSANG SPSQLSWPPN IPTLNLPGSN LQSSRLRSSI  420
NARDLQAEEF VMMGEADAQQ YQLLKDLTSH YGANSLERPG RLKTPTPLNL EDLFAADNLS  480
PRYVDSPFGS SVHSPTHKSA LLHQFQQQKQ GMISPINTNM SANNVDHHLL QGSYGAYSGR  540
MSPRNVERLE PISPINSRVS MLANREKLRS LSFREPGTNA GALVGSPLSN WGSFSGKLDW  600
ALSSEELDKL RRSSSFDMRN SREDPDSVWA HSPILEPAPE IRERASASGL AIASLTEGMS  660
SSSSNTNTLD HAALGAWLEQ MQLDELMSTS K*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein