PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0094s0109.2.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 226aa    MW: 23455.7 Da    PI: 9.2142
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0094s0109.2.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.1e-083054226
                         -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                         k +lC+ f     Ck+Gd+C+FaHg
  Kaladp0094s0109.2.p 30 KSRLCNKFNSAEGCKFGDKCHFAHG 54
                         6799******99************9 PP
2zf-CCCH38.91.4e-12192216126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykt+lC  fa+ G C++GdrC+FaHg
  Kaladp0094s0109.2.p 192 YKTKLCEKFAK-GSCSFGDRCNFAHG 216
                          9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MSNTGPAAPP STRSMVGPPS MSNASLPTVK SRLCNKFNSA EGCKFGDKCH FAHGDWELGK  60
PINLSFDDPQ GVGRSSGRMG GRMMEPPVSA AAACFGATAT TKVSVDASLA SAIIGKGGVN  120
SKQICRQTGV KLVIREHESD LNLRNVELEG TFEQISQASA MVRELIGNIS AMAGPPKSHG  180
GPGQGTPPSS NYKTKLCEKF AKGSCSFGDR CNFAHGAAEL RKPGL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-56C3H family protein