PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0561s0006.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 403aa MW: 44529.2 Da PI: 8.2111

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0561s0006.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	217	236	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Kaladp0561s0006.1.p 217 FACSICTKTFNRYNNMQMHM 236 78*****************9 PP
2	zf-C2H2	12.3	0.00052	303	323	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C+ksF k + ++H +++ Kaladp0561s0006.1.p 303 CRKCSKSFAVKGDWRTHEKNC 323 *****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MMGFKIISSF YHAVEDAQSD GITMNNSNIN GSVFQSPPAF IEWLKPFPSS PLPTDASSSS 60 SPSSSETQQP QQQHMMVGTP RLADHKPASA SVQCLPLLSK LVEDTSNHTP SSKPVKDEQQ 120 EEVDGDGGFG TLLQDDDKAT VALCIGLSTG TPSDYDLINL YGAGDLRGGA GDKMTSSAVK 180 KRGSSFSDEY AAASSFNSES RFWIPTPAQI MVGPMQFACS ICTKTFNRYN NMQMHMWGHG 240 SEYRKGPESL KGSQPAAMLR LPCYCCAQGC KNNINHPRAK PLKDFRTLQT HFKRKHGSKP 300 FLCRKCSKSF AVKGDWRTHE KNCGKLWYCT CGSDFKHKRS LKDHIRSFGK GHSPYPPMEG 360 LQFDDKEQCV MAGSSEEDEA MPDYKTLSIR VLAVRRNMEW QN*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MMGFKIISSF YHAVEDAQSD GITMNNSNIN GSVFQSPPAF IEWLKPFPSS PLPTDASSSS  60
SPSSSETQQP QQQHMMVGTP RLADHKPASA SVQCLPLLSK LVEDTSNHTP SSKPVKDEQQ  120
EEVDGDGGFG TLLQDDDKAT VALCIGLSTG TPSDYDLINL YGAGDLRGGA GDKMTSSAVK  180
KRGSSFSDEY AAASSFNSES RFWIPTPAQI MVGPMQFACS ICTKTFNRYN NMQMHMWGHG  240
SEYRKGPESL KGSQPAAMLR LPCYCCAQGC KNNINHPRAK PLKDFRTLQT HFKRKHGSKP  300
FLCRKCSKSF AVKGDWRTHE KNCGKLWYCT CGSDFKHKRS LKDHIRSFGK GHSPYPPMEG  360
LQFDDKEQCV MAGSSEEDEA MPDYKTLSIR VLAVRRNMEW QN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-117	C2H2 family protein