PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0605s0003.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 212aa    MW: 23790.9 Da    PI: 9.0527
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0605s0003.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.91.9e-3410104195
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          aCaaCk++r++C ++C+lapyfp++++++f++vhk+FG sn++k++++l+ee++++a++sl++eA +r++dPv G +g +++l  +l+  
  Kaladp0605s0003.1.p  10 ACAACKHQRKRCDEKCILAPYFPSDRAREFQAVHKVFGLSNLQKMVRSLSEEDKRRATDSLIWEAFCRQKDPVLGPYGEYRRLFDELKLY 99 
                          7***************************************************************************************99 PP

               DUF260  91 kaela 95 
                          k++l+
  Kaladp0605s0003.1.p 100 KSQLQ 104
                          99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MERGSATRTA CAACKHQRKR CDEKCILAPY FPSDRAREFQ AVHKVFGLSN LQKMVRSLSE  60
EDKRRATDSL IWEAFCRQKD PVLGPYGEYR RLFDELKLYK SQLQLPIQVS NFGTNNINGA  120
VTDHQFGTPN NNNVALLNYV QKNAGFASNQ FTCSPHHKSP KGQGEIGSII LPLQQRHLVN  180
GYNQQYCVKG QFSPMNGEAT TMESITWEGG S*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.16e-47LBD family protein