PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0714s0001.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 291aa MW: 33030.4 Da PI: 8.2727

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0714s0001.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.2	4.4e-11	63	87	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G++CkF H+ Kaladp0714s0001.1.p 63 GEKDCTHYMLTRTCKFGETCKFDHP 87 7889********************8 PP
2	zf-CCCH	29.7	1.1e-09	114	139	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++t Ck+G CkF+H++ Kaladp0714s0001.1.p 114 GEPDCPYFLKTQRCKFGLMCKFNHPK 139 6899********************96 PP
3	zf-CCCH	38.7	1.6e-12	159	184	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C f+++tG+Ck+G++C+F+H++ Kaladp0714s0001.1.p 159 FEPICAFYLKTGICKFGATCRFHHPK 184 689*********************96 PP
4	zf-CCCH	32.3	1.7e-10	239	260	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+++tG Cky +C+++H+ Kaladp0714s0001.1.p 239 DCPFYLKTGSCKYSVTCRYNHP 260 7********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MCSYVFPFFI YAYLLFILVL YHHNIVSTHN PIGQNDWLSM SYLAKRPRIE GSSILPIYPQ 60 RPGEKDCTHY MLTRTCKFGE TCKFDHPIWV PEGGIPDWKE VPPVATECLP ERSGEPDCPY 120 FLKTQRCKFG LMCKFNHPKE KLVYLNDKGE SGALPERPFE PICAFYLKTG ICKFGATCRF 180 HHPKDIQRSV LEQGSLTAEL KSFSAKIQGT TGDVKPNVIL TPALAHNAKG LPVRPGELDC 240 PFYLKTGSCK YSVTCRYNHP DRTGTYTVDF IIILYITNKT HVLVNCEIMM *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-109	C3H family protein