PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0809s0115.2.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-PHD

Protein Properties

Length: 518aa MW: 57965.5 Da PI: 5.534

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0809s0115.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	293	336	10	53
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +e L ++F+++ ps++ + L+k lgL+ ++V WF+N R+ Kaladp0809s0115.2.p 293 VAVEKLRQVFAEDELPSKSVKDNLSKLLGLSPEKVNKWFKNARY 336 56899*************************************97 PP
2	PHD	33.3	1.1e-11	18	72	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C+ + +++++lCdg C+ +fH+kCl+++l+++++p + w+C+ C++ Kaladp0809s0115.2.p 18 ICAKCKLreAFPDNDIILCDGiCNCAFHQKCLDPPLSTDNIPPEdqGWFCKFCQC 72 588888854455******88***************99999*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MEDSLIAPDG SVHHEHIICA KCKLREAFPD NDIILCDGIC NCAFHQKCLD PPLSTDNIPP 60 EDQGWFCKFC QCRMDIIDVM NAHLGTHISM GSNWQDIFSE EASIVDGADD PPHIGEVQWP 120 SDDSNDDDYD PEKKECSYST GLMEAEDSSS LSRCDSVSIS WSFEEEAFSD LQGSQHSGMP 180 AVMNSACFQS CADSAGTMTD MTIEGCRQRR TVDYKKLYIE MFGKDAPGNE QLSEDEDWGP 240 GKRIRKEKES YAASTLMTLF SCENIDPDDA VQAKEEHHQG AHSRRPLFRI PPVAVEKLRQ 300 VFAEDELPSK SVKDNLSKLL GLSPEKVNKW FKNARYLALR NRKMGSSIGC PNPIGTCSNE 360 SPLNEQCVEN KVICGDTLNG GSSSSLVNAS MIKQSGYRAQ SLSNLRKKKR HRRTLLGLSS 420 CNTTKVMMDF NENVSLKQQL QLLKSASKKR IWNHLDFKEG FNRRPTRVEM EMERLCTIKC 480 RVDGMLENLS VLLKQKSGTP KAEAVVYVPI AEVKEKF*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MEDSLIAPDG SVHHEHIICA KCKLREAFPD NDIILCDGIC NCAFHQKCLD PPLSTDNIPP  60
EDQGWFCKFC QCRMDIIDVM NAHLGTHISM GSNWQDIFSE EASIVDGADD PPHIGEVQWP  120
SDDSNDDDYD PEKKECSYST GLMEAEDSSS LSRCDSVSIS WSFEEEAFSD LQGSQHSGMP  180
AVMNSACFQS CADSAGTMTD MTIEGCRQRR TVDYKKLYIE MFGKDAPGNE QLSEDEDWGP  240
GKRIRKEKES YAASTLMTLF SCENIDPDDA VQAKEEHHQG AHSRRPLFRI PPVAVEKLRQ  300
VFAEDELPSK SVKDNLSKLL GLSPEKVNKW FKNARYLALR NRKMGSSIGC PNPIGTCSNE  360
SPLNEQCVEN KVICGDTLNG GSSSSLVNAS MIKQSGYRAQ SLSNLRKKKR HRRTLLGLSS  420
CNTTKVMMDF NENVSLKQQL QLLKSASKKR IWNHLDFKEG FNRRPTRVEM EMERLCTIKC  480
RVDGMLENLS VLLKQKSGTP KAEAVVYVPI AEVKEKF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	2e-52	HB-PHD family protein