PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0975s0001.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 227aa    MW: 23957.9 Da    PI: 5.321
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0975s0001.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.33.8e-312103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ Cvl+p++     p++q +++ +v+k+FG++ ++++++++p+++r+++++sl+yeA+ ra +Pv+Gavg++ ++++
  Kaladp0975s0001.1.p   2 SCNGCRVLRKGCSETCVLRPCLqwidsPESQGHATVFVAKFFGRAGLMSFISKAPDSQRPALFQSLLYEACGRAVNPVSGAVGLLGTGNW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l+
  Kaladp0975s0001.1.p  92 HVCQVAVETVLR 103
                          ******999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MSCNGCRVLR KGCSETCVLR PCLQWIDSPE SQGHATVFVA KFFGRAGLMS FISKAPDSQR  60
PALFQSLLYE ACGRAVNPVS GAVGLLGTGN WHVCQVAVET VLRGGTLRSV PADLLDNGGQ  120
ARPPPADESS EEATCSNMCS IMRSGKQDTN KSGGVGVSPP GAAELDLSLS PSHEQQFDKR  180
GRAGSPSEES GTSFEMGQNG HFDVEEQLQL QPQRGSGEVK LLELFG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.17e-73LBD family protein