PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH79328.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

MIKC_MADS

Protein Properties

Length: 156aa MW: 17480.1 Da PI: 7.1327

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH79328.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.8	2.8e-18	28	59	20	51
HHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstgklyeyss 51 +lKKA+ELSvLCdaevavii+s tgklye+ss MCH79328.1 28 LLKKAKELSVLCDAEVAVIIYSGTGKLYEFSS 59 8*****************************96 PP
2	K-box	37.5	1e-13	88	150	7	69
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 s +e ae + + a L++ei +L+++ ++ G++L+ L lkeLq Le+qL +++ +++kK MCH79328.1 88 PSGDEPPAEVVEPDTALLQEEITKLRSSYLRMSGKELDGLGLKELQYLENQLCEGICAVKNKK 150 44566667777888999*********************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence
MGRGKIEIKK IXXXXXXXXX XXXXXXXLLK KAKELSVLCD AEVAVIIYSG TGKLYEFSSK 60 SMEHTLSRYG TRSLDLNNGA EQQQQQQPSG DEPPAEVVEP DTALLQEEIT KLRSSYLRMS 120 GKELDGLGLK ELQYLENQLC EGICAVKNKK GRPNCM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	1e-20	MIKC_MADS family protein