PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH80939.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 305aa    MW: 34259.7 Da    PI: 5.5193
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH80939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.34.8e-17651041756
                 HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 elF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  MCH80939.1  65 ELFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 104
                 79**********************************9877 PP
2START35.91.8e-12221296469
                 HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCG CS
       START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddk 69 
                 ++a++el+k+a+ +ep+W +s     e++n+de++++f+ +++      +s+ea+r++gvv+++l++ v+ +ld  
  MCH80939.1 221 NQAMDELIKMATMDEPLWLRSLetgrEILNYDEYMKEFVVENSdngrpkRSIEASRDTGVVFADLPRIVQCFLDAV 296
                 789***********************************9988899*************************999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
PPPSSSRAKD FFPSPALSLS LAGIFRHGGL AAEGEGASTS NMEVEEGEEG STVGGDQRVE  60
EISSELFKES PHPDEKQRQQ LSKQLGLAPR QVKFWFQNRR TQIKAIQERH ENSLLKTEIE  120
KLREKNKTLR ETINKACCPN CGVPTTNKDG AMPTEEQQLR IENVKLKAEV EKLRAALGKH  180
ASGTMSPSCS TSHDQENIKS SLDFYTGIFG LDESRIMDVV NQAMDELIKM ATMDEPLWLR  240
SLETGREILN YDEYMKEFVV ENSDNGRPKR SIEASRDTGV VFADLPRIVQ CFLDAVRYKL  300
MLIHS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.16e-90HD-ZIP family protein