PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH81035.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 177aa    MW: 19962.7 Da    PI: 5.1592
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH81035.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.12e-221257449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                ++   rqvtfskRr+g++KKA+ELS+LC+aeva+++fs+ +k y +
  MCH81035.1 12 KDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSF 57
                56678**********************************9998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MGRRKIEIEI VKDPNTRQVT FSKRRTGLFK KANELSILCG AEVAIVVFSP GNKPYSFGHP  60
GVDVVAAKYL QQDPEPSDSQ GEPFSDASNM DNLNLELAEV LAEIREGEKQ AKTYDEILKQ  120
NDVTTLSELE ELRDSYKGLQ DWVKLCLSDI EISEYMMLLA KEPVVGVKAT KKNRRRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-34M-type_MADS family protein