PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH81088.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 265aa    MW: 30080.9 Da    PI: 6.222
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH81088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC173.81.8e-54811851102
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw++q   ie++ dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+d+aaa++r d+fdflvdi+
  MCH81088.1  81 QLQMFWANQmqeIEQTFDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDVAAAIARNDVFDFLVDII 179
                 89******9878899************************************************************************************ PP

       NF-YC  97 prdelk 102
                 prdelk
  MCH81088.1 180 PRDELK 185
                 ***975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MDNSEQNQQQ QQHVMGVAPN DSQMTYSSHY QTVPMMASGT PAGAIPTATH PPATFSNSAH  60
QFAYQQAQHF HHQQQNQQQQ QLQMFWANQM QEIEQTFDFK NHTLPLARIK KIMKADEDVR  120
MISAEAPVVF AKACEMFILE LTLRSWIHTE ENKRRTLQKN DVAAAIARND VFDFLVDIIP  180
RDELKEEGLG IAKGTIPIIG APADMPYYFV PPQHHLSPTG MIMGNPVDQA ALYSNQQPRP  240
PMAFMPWPNA HPQQQQPPQQ QQTDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.15e-72NF-YC family protein