PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH82088.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C3H

Protein Properties

Length: 191aa MW: 21304.4 Da PI: 9.7503

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH82088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.3	8.5e-11	52	72	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +++++tGtCk+G++C+F+H++ MCH82088.1 52 KYYLKTGTCKFGATCRFHHPK 72 79*****************96 PP
2	zf-CCCH	38.1	2.6e-12	94	118	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ MCH82088.1 94 ESECAYYLRTGQCKFGNTCKFHHPQ 118 679********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence
YCHCKDERRV PRKVRAARMS GMYLFLNECI RCLQSSDLVP SKISSTFDAF LKYYLKTGTC 60 KFGATCRFHH PKDKAGIAGR VALNILGYPL RPNESECAYY LRTGQCKFGN TCKFHHPQPN 120 NMVLSMRGSP AYPTVQSPTT PGQQSYAAGI TNWSSSSYIP SPRWQGPSSY APLILPQGMV 180 SVPGWSTYNV S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-54	C3H family protein