PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH82208.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family NF-X1
Protein Properties Length: 205aa    MW: 22947.2 Da    PI: 8.4954
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH82208.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.32.2e-05114619
    zf-NF-X1  6 CqklCHeGpCppCp 19
                C ++CH+G CppC+
  MCH82208.1  1 CVEICHRGACPPCR 14
                889**********8 PP
2zf-NF-X117.87.5e-064968120
    zf-NF-X1  1 CGkHkCqklCHeGpCppCpq 20
                CGkH C++ CH G+C++Cp+
  MCH82208.1 49 CGKHVCERGCHSGECGECPL 68
                ******************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
CVEICHRGAC PPCRARGVYR CQCGKVKEER ECCDRVFRCD DPCEKKLSCG KHVCERGCHS  60
GECGECPLQG KRTCPCGKRV YEGMPCDAPM QVCGATCDKM LPCGYHRCHE RCHRGQCIET  120
CRIVVRKCCR CGSLKKDSRY LAIKIWYVRG SVRRCETVVG ILVNAAAVME IALRAQRYVA  180
RGFAVGTINA NLHAIEVPVL LVLLW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.12e-60NF-X1 family protein