PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH82574.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

Nin-like

Protein Properties

Length: 607aa MW: 68015.9 Da PI: 4.9966

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH82574.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	21.2	5.9e-07	582	607	1	26
RWP-RK 1 aekeisledlskyFslpikdAAkeLg 26 aek+i+l++l++yF++++kdAAk++g MCH82574.1 582 AEKTITLQVLRQYFAGSLKDAAKNIG 607 589*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence
MGDGAAVTSS ATMMEGPPQD ENSMDFDYMS ELLLDGCWLE ASADGSEFLL QSSPFSNPIF 60 DPSFSWPSLE NTEPPRNEDG RVGIEQESQI IVNNAGSSDR QQCEFETRSG EGVSRLWIPP 120 TPNPGPGGSF ITEKLIRALK WIKDFNRNKD MLIQIWVPVN RGDDRPILRA NDLPFSLESR 180 SLNLAKYREI SVRYQFSAEE EDSKELVAGL PGRVYRDKIP EWTPDVRFFR SEEYPRVDHA 240 QECDIHGTLA VPVFEQGSRT CLGVIEVVMT TQQSNYGREL ETVCKALEVV DLRSSGHSSL 300 QNLKACDKSY ETALPEIQEV LRSACEMHKL PLAQTWISCI QQGKDGCRHS DDNYANCISP 360 VEYACYVGDS SVRFFHEACM EHHLLKGQGV AGGAFMTNQP CFSADITSLS KTDYPLSHHA 420 RLFGLRAAVA IRLRSIYSTS DDYVLEFFLP VDCNDSEEQK NMLTSLSMII QRVCRSLRVI 480 TDKELDKDNL SSNEVMAVAD GRFATNAIWS ESQHRRMAAS LGXEEKFSET MGRKFXKQRQ 540 QQETLTLKGD LDCGRAHSPS VEGTFLSSLG INRTGEKRRA KAEKTITLQV LRQYFAGSLK 600 DAAKNIG

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence

MGDGAAVTSS ATMMEGPPQD ENSMDFDYMS ELLLDGCWLE ASADGSEFLL QSSPFSNPIF  60
DPSFSWPSLE NTEPPRNEDG RVGIEQESQI IVNNAGSSDR QQCEFETRSG EGVSRLWIPP  120
TPNPGPGGSF ITEKLIRALK WIKDFNRNKD MLIQIWVPVN RGDDRPILRA NDLPFSLESR  180
SLNLAKYREI SVRYQFSAEE EDSKELVAGL PGRVYRDKIP EWTPDVRFFR SEEYPRVDHA  240
QECDIHGTLA VPVFEQGSRT CLGVIEVVMT TQQSNYGREL ETVCKALEVV DLRSSGHSSL  300
QNLKACDKSY ETALPEIQEV LRSACEMHKL PLAQTWISCI QQGKDGCRHS DDNYANCISP  360
VEYACYVGDS SVRFFHEACM EHHLLKGQGV AGGAFMTNQP CFSADITSLS KTDYPLSHHA  420
RLFGLRAAVA IRLRSIYSTS DDYVLEFFLP VDCNDSEEQK NMLTSLSMII QRVCRSLRVI  480
TDKELDKDNL SSNEVMAVAD GRFATNAIWS ESQHRRMAAS LGXEEKFSET MGRKFXKQRQ  540
QQETLTLKGD LDCGRAHSPS VEGTFLSSLG INRTGEKRRA KAEKTITLQV LRQYFAGSLK  600
DAAKNIG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein