PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH82787.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 535aa MW: 60539.5 Da PI: 7.2261

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH82787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	104.9	1.1e-32	405	513	268	374
GRAS 268 fdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 f+ l ++l+ s + + + +++lg++i+n+vaceg++r+erhetl++Wr+r++ aGF++++l+++a a+lll+ ++ dgy+vee++g+l+ gW+ MCH82787.1 405 FEKLRQGLGVCSssSLNLNQQEVYLGKQICNMVACEGTDRVERHETLNQWRNRFGWAGFSSLHLGSNALLRASLLLSLFSRDGYKVEENDGCLMHGWHA 503 66665555444411556666789************************************************************************** PP GRAS 365 rpLvsvSaWr 374 rpL+++SaW+ MCH82787.1 504 RPLIATSAWK 513 *******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MNLITFGPCV NEDPITFEEA EKSDIWRKAM NIELESIERN NTWQLTDLPK VAKGYAQRYG 60 TDYKEVFAPV ARWDTIRSLL AIAALNEWSV FQLDVKSAFL HGELSETVYV EQPPGNMIKG 120 FKDSMMNTFD MTDLGKMRHF LGIEVTQSSE GIFVCQQKYA KDILEKFKMD KSNAVCSPIV 180 TGTRLSKHDK GDEVNPTEFK QIIGSLMYLT ATRPDLMFVV HMIARFVEHP VETHMMAAKR 240 ILIYIKGTLD LGILYKKGMK AELVAYSDSD YGGDIDDRKS TSGYVFMIGS GAVSWLSKKQ 300 PIVTLSTTEA EFIAAAHCVC QGIWMERILN YMGLKQQECF KVFCDNSSTI KLSKNPVLHG 360 RSKHIDIRFH FLRNLSCEGA VELVHCSSQN QMADIMTKTL KLETFEKLRQ GLGVCSSSSL 420 NLNQQEVYLG KQICNMVACE GTDRVERHET LNQWRNRFGW AGFSSLHLGS NALLRASLLL 480 SLFSRDGYKV EENDGCLMHG WHARPLIATS AWKLTADNSV AVSHWVNSSG HWYFN

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MNLITFGPCV NEDPITFEEA EKSDIWRKAM NIELESIERN NTWQLTDLPK VAKGYAQRYG  60
TDYKEVFAPV ARWDTIRSLL AIAALNEWSV FQLDVKSAFL HGELSETVYV EQPPGNMIKG  120
FKDSMMNTFD MTDLGKMRHF LGIEVTQSSE GIFVCQQKYA KDILEKFKMD KSNAVCSPIV  180
TGTRLSKHDK GDEVNPTEFK QIIGSLMYLT ATRPDLMFVV HMIARFVEHP VETHMMAAKR  240
ILIYIKGTLD LGILYKKGMK AELVAYSDSD YGGDIDDRKS TSGYVFMIGS GAVSWLSKKQ  300
PIVTLSTTEA EFIAAAHCVC QGIWMERILN YMGLKQQECF KVFCDNSSTI KLSKNPVLHG  360
RSKHIDIRFH FLRNLSCEGA VELVHCSSQN QMADIMTKTL KLETFEKLRQ GLGVCSSSSL  420
NLNQQEVYLG KQICNMVACE GTDRVERHET LNQWRNRFGW AGFSSLHLGS NALLRASLLL  480
SLFSRDGYKV EENDGCLMHG WHARPLIATS AWKLTADNSV AVSHWVNSSG HWYFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	6e-33	GRAS family protein