PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH83530.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 60aa    MW: 6893.49 Da    PI: 9.9061
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH83530.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.72.4e-261158350
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 +n ++rqv fs Rr+ ++KKA+ELS+LCdaev vi+fsstgkly++s
  MCH83530.1 11 TDNLIRRQVAFSERRKSLFKKAKELSILCDAEVGVIVFSSTGKLYZFS 58
                6899*******************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    
MGSRDIEIEK TDNLIRRQVA FSERRKSLFK KAKELSILCD AEVGVIVFSS TGKLYZFSRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.15e-22MIKC_MADS family protein