PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH83565.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

MYB

Protein Properties

Length: 363aa MW: 41400.9 Da PI: 9.7081

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH83565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.9	7.3e-16	11	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++++++m+ ++R +k+c +rw +yl MCH83565.1 11 RQRWRAEEDALLRAYVKQYGPREWNLVSQRMNtpLNRDAKSCLERWKNYL 60 89**********************************************97 PP
2	Myb_DNA-binding	33.4	1.1e-10	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l + + + +G++ Wk+Ia+ ++ gRt+k + +w + MCH83565.1 66 KGSLTEEEQRLVISLQATHGNK-WKKIAAQVP-GRTAKRLGKWWEVF 110 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MSDMHLEMKD RQRWRAEEDA LLRAYVKQYG PREWNLVSQR MNTPLNRDAK SCLERWKNYL 60 KPGIKKGSLT EEEQRLVISL QATHGNKWKK IAAQVPGRTA KRLGKWWEVF KEKQQRETKG 120 SINRTVDPIN DSKYEHILES FAEKLVKERP SPSFVMAASN SSYLHTDAPP TPGLLPSWLS 180 NSNNAAPVRP NSPSVTLSLS PSTVAAPPPW MQQPVRGPDN TPLVLGNVAP HGAVLSYGEN 240 MVMSELVDCC KELEEVHHAL AAHKKEAAWR LSRVELQLES EKASRRREKM EEIEAKIKAL 300 REEQAVALDR IEGEYKEQLA GLXRDAETKE QKLTEQWAAK HLRLTKFLEQ VGCRSRLAEQ 360 NGR

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MSDMHLEMKD RQRWRAEEDA LLRAYVKQYG PREWNLVSQR MNTPLNRDAK SCLERWKNYL  60
KPGIKKGSLT EEEQRLVISL QATHGNKWKK IAAQVPGRTA KRLGKWWEVF KEKQQRETKG  120
SINRTVDPIN DSKYEHILES FAEKLVKERP SPSFVMAASN SSYLHTDAPP TPGLLPSWLS  180
NSNNAAPVRP NSPSVTLSLS PSTVAAPPPW MQQPVRGPDN TPLVLGNVAP HGAVLSYGEN  240
MVMSELVDCC KELEEVHHAL AAHKKEAAWR LSRVELQLES EKASRRREKM EEIEAKIKAL  300
REEQAVALDR IEGEYKEQLA GLXRDAETKE QKLTEQWAAK HLRLTKFLEQ VGCRSRLAEQ  360
NGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-126	MYB family protein