PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH83642.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 460aa    MW: 51737.9 Da    PI: 5.9903
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH83642.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS463.61.2e-141314571374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+cA++v+sg+le+a+++L+++s+laspdgd+mqR+aayfteALa r+++++++l +al++++      see++++k+f+e++P+lk++++++N
  MCH83642.1  31 LIHLLLTCANHVASGSLENANTTLEQISQLASPDGDTMQRIAAYFTEALAVRILKTWPGLHRALNSTRII--MLSEEIMVQKFFFELFPFLKVAYILTN 127
                 689*************************************************************988886..69************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaI+e++ege++vHiiD+++ +++QW+aLlq L++Rpegpp+lRiTg+++    +ke l +++++L++ Ae+l++pf+fn+ v+++le+l++++Lrvk+
  MCH83642.1 128 QAIVESMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGPPHLRITGIHQ----QKEVLDQMAHKLSEEAEKLDIPFQFNP-VVSKLENLDFDKLRVKT 221
                 **************************************************....9**************************.799************** PP

        GRAS 199 gEalaVnlvlqlhrll..............................................................desvsleserdevLklvksls 235
                 gEala++++lqlh+ll                                                              ++++sl+   +++L++++sls
  MCH83642.1 222 GEALAISSILQLHSLLalddessssrrktxxxxxxsnglhlqkvmlmnqsaslgdllekdmvngytpspdstsssspaSSTASLN--AESFLNALWSLS 318
                 ************************************************************************9988754444444..599********* PP

        GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                 Pkv+vv+eq+++hn+++++er+leal+ y+alfd+le++++r+s er k+E++l+g+ei+n++acegaer+erhe+l kW +rl+ +GF++vpls++ +
  MCH83642.1 319 PKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERFKIEKMLFGEEIKNIIACEGAERKERHEKLDKWFMRLDLCGFGNVPLSYYGM 417
                 *************************************************************************************************** PP

        GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  qa++ l+ ++ +gy++ ee+g++ ++W+dr+L+s++aWr
  MCH83642.1 418 LQARRFLQSYGCEGYKMREENGCVAICWQDRSLFSTTAWR 457
                 ***************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    
MMSLSPNIGG IGSPYPWLSR ELKSEERGLY LIHLLLTCAN HVASGSLENA NTTLEQISQL  60
ASPDGDTMQR IAAYFTEALA VRILKTWPGL HRALNSTRII MLSEEIMVQK FFFELFPFLK  120
VAYILTNQAI VESMEGEKMV HIIDLNAAEP AQWIALLQVL SARPEGPPHL RITGIHQQKE  180
VLDQMAHKLS EEAEKLDIPF QFNPVVSKLE NLDFDKLRVK TGEALAISSI LQLHSLLALD  240
DESSSSRRKT XXXXXXSNGL HLQKVMLMNQ SASLGDLLEK DMVNGYTPSP DSTSSSSPAS  300
STASLNAESF LNALWSLSPK VMVVTEQDSN HNGSTLMERL LEALYSYAAL FDCLESTVSR  360
TSLERFKIEK MLFGEEIKNI IACEGAERKE RHEKLDKWFM RLDLCGFGNV PLSYYGMLQA  420
RRFLQSYGCE GYKMREENGC VAICWQDRSL FSTTAWRARK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein