PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH83815.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 226aa    MW: 25506.5 Da    PI: 8.45
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH83815.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-144791347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE+ +++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
       MCH83815.1 47 PWTEEEHRKFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 91
                     8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MDSFPTSSSS PTSSFSSSRL NIDEKTSIGY LSDGLIVRTQ ERKKGVPWTE EEHRKFLVGL  60
EKLGKGDWRG ISRNYVTTRT PTQVASHAQK YFIRLATLNK KKRRSSLFDM VGSGNTNRTN  120
DHEQFKSKCE AHEKDNATLS LLITSLQQQT KSTDYNKQKI EDAEIEEAEE TEHEVVPDWL  180
HPLTKSLNMT LVIPNSSNAI TPDLELTLAV PKSNKTMEQD KTSKSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100104KKKRR
2100128KKKRRSSLFDMVGSGNTNRTNDHEQFKSK
3101129KKKRRSSLFDMVGSGNTNRTNDHEQFKSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.13e-44MYB_related family protein