PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH83855.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C3H

Protein Properties

Length: 221aa MW: 24131.6 Da PI: 9.1559

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH83855.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.3	3.4e-10	1	20	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f++tGtCkyG++Ck++H++ MCH83855.1 1 YFLKTGTCKYGSTCKYHHPK 20 8*****************96 PP
2	zf-CCCH	39.3	1.1e-12	43	65	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H++ MCH83855.1 43 SCPYYMRTGSCKFGVACKFHHPQ 65 6********************97 PP
3	zf-CCCH	41	3.2e-13	178	203	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f+ tGtCkyG+ CkF+H++ MCH83855.1 178 DQPDCKYFMSTGTCKYGSDCKFHHPK 203 6899********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
YFLKTGTCKY GSTCKYHHPK DRRGAAPVVF NTLGLPMRQE EKSCPYYMRT GSCKFGVACK 60 FHHPQQQASF GAYPVAASPP STTVTSSGFP YAGGFPAWSV PRMSYLSGQA IQSYVPPFMP 120 SSQGIMPALS WSNYMGSISP AMPSGFIGSN LVYDYMNPAG ETLSGGQVMN STLPDRPDQP 180 DCKYFMSTGT CKYGSDCKFH HPKERIAQTL SVNPLGLPMR P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	6e-58	C3H family protein