PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH84999.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C3H

Protein Properties

Length: 242aa MW: 26485.3 Da PI: 7.3364

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH84999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.7	7.2e-12	31	56	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++t Ck+G+rCkF+H+ MCH84999.1 31 PGEPDCPFFLKTQKCKFGSRCKFNHP 56 5789*********************8 PP
2	zf-CCCH	39.5	9.4e-13	73	98	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG CkyG+ CkF+H++ MCH84999.1 73 QEPPCAFYLKTGKCKYGAACKFHHPK 98 689*********************96 PP
3	zf-CCCH	40.6	4.2e-13	152	175	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG Ck+G++C+++H+ MCH84999.1 152 EVDCPFYMKTGSCKFGASCRYNHP 175 689********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MLPVFLVILM FPDQCLLVPN VVPSETLPER PGEPDCPFFL KTQKCKFGSR CKFNHPNVPS 60 ENPDVSGLPE RPQEPPCAFY LKTGKCKYGA ACKFHHPKDI QIQFSDESSR TVEQTQTNSS 120 MFDGAIGDAQ QTKPLISPLL HNSKGLPVRL GEVDCPFYMK TGSCKFGASC RYNHPDMNAI 180 NPPISALAPS LLGSSAANHN IGVINPAASF YQAFDPRISN PMTQVGVTGT IYPQRPGQIE 240 CD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	4e-71	C3H family protein