PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH85050.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

MYB

Protein Properties

Length: 250aa MW: 29501.1 Da PI: 9.5428

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH85050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.9	5.4e-19	23	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+ +G g+W+++ar g++R +k+c++rw +yl MCH85050.1 23 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLRRNGKSCRLRWVNYL 70 79********************************************97 PP
2	Myb_DNA-binding	53.8	4.5e-17	76	120	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++d+++++G++ W+tIar ++ gRt++++k++w+++ MCH85050.1 76 RGQITPQEESIILDLHARWGNR-WSTIARNLP-GRTDNEIKNYWRTH 120 7888****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MYYRGVMAGQ IGHGIMEEEL WRKGPWTAEE DRLLIEYVRV HGEGRWNSVA RLAGLRRNGK 60 SCRLRWVNYL RPDLKRGQIT PQEESIILDL HARWGNRWST IARNLPGRTD NEIKNYWRTH 120 FKKKAKNPSD AAEKAKNRFL RKQLFHQQQQ QLQQVQQQQQ QQLQFNLDMK DVMSLFEENN 180 INNHKVPYIS QTRQEMFNMC PNTTEEQSYF MFNGNSSVQD SSADDVLWDG LWNLDDVHGN 240 FSVANATNKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13480.1	4e-82	MYB family protein