PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH85111.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 173aa    MW: 18988.4 Da    PI: 9.972
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH85111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1375.6e-4382157277
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 Cqv gC++dls +k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q
  MCH85111.1  82 CQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQ 157
                 **************************************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MDNDVVMAAP NAFSGRELSN SLGETNGCNS LIDLKLGRFG DHGDAIGTSF SKGTAILSSS  60
GSSSTPPKRV RSSSVHSQVA YCQVYGCNKD LSGCKDYHKR HKVCEVHSKT SKVIVNGIEQ  120
RFCQQCSRFH LLVEFDDGKR SCRKRLAGHN ERRRKPQVGI HSGRAGRLLQ SYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-52SBP family protein