PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH85179.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 192aa    MW: 20820.7 Da    PI: 10.5688
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH85179.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF694.3e-2254101249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                   +n+sn +vtfskRr g++KKA+EL+ LC+++va+++fs++gk + +
  MCH85179.1  54 NMSNESNLHVTFSKRRSGLFKKASELCSLCGVDVALVVFSPSGKAFSF 101
                 679****************************************97766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
SATPRAASAA PRAGTSKQKE EMCMQLRHRV ITELSSVMSS GRKGKGRRKI EMKNMSNESN  60
LHVTFSKRRS GLFKKASELC SLCGVDVALV VFSPSGKAFS FGHPNVDTVL EVLKKLVAQH  120
NDSIAIQGAP TQTLPFSVGN ASSSNISHHH QPNSLQQSQM FAPQYFQNPM LEPHLFGFNN  180
MGGGGYGPPG FF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.14e-34M-type_MADS family protein