PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH85601.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 494aa    MW: 55789.1 Da    PI: 7.3848
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH85601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.61.1e-1101174931374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPilkfs 94 
                 lv+lL++cAeav       a+ lL++l+ +a   g+++qR+a++f+++L +rl+  ++   +++ + ++s +n     s+e   a+kl +e++P l+f+
  MCH85601.1 117 LVQLLIACAEAVXXXXXXXASVLLSELKSNALVFGSSFQRVASCFVQGLTERLTLIQPIGNNSVGSDTKSMMNimdaaSEEMEEAFKLVYEICPHLQFG 215
                 689***************************************************97777777777777777778888888888999************* PP

        GRAS  95 hltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp...slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                 h++aN+ Ilea+ege+ vH++D+++s    +G QW  L+q+La+R++++    +lRiT+vg        +++ +g+ L+ +A++lgv++ef++ v+k+l
  MCH85601.1 216 HFVANSIILEAFEGESFVHVVDLGMSlglpHGHQWRGLIQSLANRSGSQRvlrRLRITAVGL----CIARIQVIGKELSIYAKNLGVHLEFSI-VEKNL 309
                 **********************99874444678*************775433499*******....**************************9.8**** PP

        GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                 e+l++e+++v+++E+l+Vn++lqlh +++es    +   +vL++v +lsPkv+v+veq++ hn++ Fl rf+e+l+yysa+fdsl+a lp+ + +r+k+
  MCH85601.1 310 ENLKPEDIKVNEKEVLVVNSILQLHCVVKESRGALN---SVLQMVHGLSPKVLVMVEQDSGHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYDTKRAKI 405
                 ****************************88877777...8*********************************************************** PP

        GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 E++++++ei+n+v+ceg  r erhe++ +Wr+r+++aGF+ +p++   + qak  l k k  dgy+v ee+g+lvlgWk++p+v+vS+W+
  MCH85601.1 406 EQFYFAEEIKNIVSCEGPLRMERHEKVDQWRRRMSRAGFQGAPIKM--VVQAKQWLLKNKiCDGYTVVEEKGCLVLGWKSKPIVAVSCWK 493
                 *******************************************975..56777766666669***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    
MPILENSXXX XXXXXXXSDE SETIRDHKKL KRSTITIPIL FANISNHNST SINTFFKNSI  60
KSSVNSIPRL HFRDHIRTYK QRYFAAEAVE EAAEEHFNYN NSEAEEEDGT CADGMRLVQL  120
LIACAEAVXX XXXXXASVLL SELKSNALVF GSSFQRVASC FVQGLTERLT LIQPIGNNSV  180
GSDTKSMMNI MDAASEEMEE AFKLVYEICP HLQFGHFVAN SIILEAFEGE SFVHVVDLGM  240
SLGLPHGHQW RGLIQSLANR SGSQRVLRRL RITAVGLCIA RIQVIGKELS IYAKNLGVHL  300
EFSIVEKNLE NLKPEDIKVN EKEVLVVNSI LQLHCVVKES RGALNSVLQM VHGLSPKVLV  360
MVEQDSGHNG PFFLGRFMES LHYYSAIFDS LDAMLPKYDT KRAKIEQFYF AEEIKNIVSC  420
EGPLRMERHE KVDQWRRRMS RAGFQGAPIK MVVQAKQWLL KNKICDGYTV VEEKGCLVLG  480
WKSKPIVAVS CWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-77GRAS family protein