PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH85638.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 516aa MW: 59537.9 Da PI: 7.83

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH85638.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.6	2.3e-14	2	63	30	89
FAR1 30 krtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 ++tf Cs+eg+re++ + ++++r++++etr+gCkak++v+ + + +w+vt le +HnH+l MCH85638.1 2 QQTFLCSCEGFREDRGLTlENRKREPKNETRCGCKAKFRVHVDIvSMRWYVTLLEIDHNHDL 63 689**********9997889999*************999*************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
LQQTFLCSCE GFREDRGLTL ENRKREPKNE TRCGCKAKFR VHVDIVSMRW YVTLLEIDHN 60 HDLLGGTLCG LLPAHRKMSQ GDIDEIGRNR KAGIRPYQVY GSMANTSGGF HKVGFVKKDL 120 YNQVGKQKKL LYSDACGAVK YLQELCTKDP LMFVAHSIDK ERKLERLFWC DGESRMNYEI 180 FGDVLAFDAT YRKNKYNCPF VVFSGVNHHN QTIVFATGIV TRETEETYVW LLEQLLIAMK 240 GKHPLSVITD GDTAIKNAIK RIFPKAHHRL CAWHLLRNVS SNIGIPDVMS HIKRCMLGDM 300 EVGQFEMLWH EMVEKFDLHD NNWIKEICLT YFRFREIEAD FQSNYGQPVL QTSLRGIERS 360 AAKQFTKEIF ILFRSVLKKA MLLRVIECQE MSTGYILKVV KYCGVGRVWH VTYCEDPLDL 420 RCSCLRMESL GLPCDHIVAV LLYLDIDDLP SCLVLPRWSK YAKDQIREKY GNGSLYWDSQ 480 PAARYSGIFQ MCKVVAELVH DDLDEFNNVI DMLGDG

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

LQQTFLCSCE GFREDRGLTL ENRKREPKNE TRCGCKAKFR VHVDIVSMRW YVTLLEIDHN  60
HDLLGGTLCG LLPAHRKMSQ GDIDEIGRNR KAGIRPYQVY GSMANTSGGF HKVGFVKKDL  120
YNQVGKQKKL LYSDACGAVK YLQELCTKDP LMFVAHSIDK ERKLERLFWC DGESRMNYEI  180
FGDVLAFDAT YRKNKYNCPF VVFSGVNHHN QTIVFATGIV TRETEETYVW LLEQLLIAMK  240
GKHPLSVITD GDTAIKNAIK RIFPKAHHRL CAWHLLRNVS SNIGIPDVMS HIKRCMLGDM  300
EVGQFEMLWH EMVEKFDLHD NNWIKEICLT YFRFREIEAD FQSNYGQPVL QTSLRGIERS  360
AAKQFTKEIF ILFRSVLKKA MLLRVIECQE MSTGYILKVV KYCGVGRVWH VTYCEDPLDL  420
RCSCLRMESL GLPCDHIVAV LLYLDIDDLP SCLVLPRWSK YAKDQIREKY GNGSLYWDSQ  480
PAARYSGIFQ MCKVVAELVH DDLDEFNNVI DMLGDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-71	FAR1 family protein