PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH85653.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 238aa MW: 26517.2 Da PI: 6.1594

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH85653.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.2	6.5e-39	11	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC ++Cv+apyf +eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+++la+lk MCH85653.1 11 PCGACKFLRRKCIRGCVFAPYFSHEQgATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQTQLAYLK 109 7***********************89*******************************************************************99 PP DUF260 99 ee 100 e+ MCH85653.1 110 EQ 111 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MAGSSSVSGS PCGACKFLRR KCIRGCVFAP YFSHEQGATH FAAIHKVFGA SNVSKLLAHL 60 PVSDRCEAAV TISYEAQARL QDPIYGCVSH IFALQQQVVN LQTQLAYLKE QASQTCVNNA 120 STNENPNEKS TTLTPLQDLQ SLFHVENSNS HQHGQEFHTN NLSNISSTTQ YYVNNNNLMD 180 LNPMRNYENS RGVMEENSSF SSFEESTSNS MSYDMQTNRR TWGFDEVEDL HSVAFGYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	5e-61	LBD family protein