PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH85744.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

NF-YC

Protein Properties

Length: 280aa MW: 30814.9 Da PI: 5.2615

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH85744.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	54.9	2e-17	1	75	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r MCH85744.1 1 ARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSR 75 7***********************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
ARIKKIMQAD EDVGKIALAV PVLVSKALEL FLQDLCDRTY EITLQRGAKT MNALHLKHCV 60 QSYNVFDFLR DIVSRVPDYS HGHAHAHAEP GADDRALPKR RKAGGDDGND SDDEAKRSKM 120 HESGHTGGTG RGRGRGRGRG RGRGARAAER EALHQQVEPE PCTSMQQSSK EVSNTSMAID 180 NGPESKQLSK ENNTVHEEST QSLRNIDLNA SIHENEDKNN TSMATTQASL PEPAATTDMQ 240 HEEIPGWSLP DVDKMAIDTL QLAANLGNRI EEEEDYDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	140	RGRGRGRGRG
2	131	141	RGRGRGRGRGR
3	133	142	RGRGRGRGRG
4	133	143	RGRGRGRGRGR
5	135	144	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-61	NF-YC family protein