PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH86056.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 306aa MW: 34784.2 Da PI: 9.3215

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH86056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.8	1.1e-14	119	165	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ MCH86056.1 119 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYLKQLR 165 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
LHHPLEDLTQ EDTHYSQTVS TILQNQSTRW INSPSINYIT YSTQSSFTTW TNHNFHTPPP 60 DTTASQWLLK YILFTVPFLH TKNHDETXXX XXXXXXXXXX XXXXXLRGKG GPQDELSANH 120 VLAERRRREK LNERFIILRS LVPFVTKMDK ASILGDTIEY LKQLRRKIQD LETRNRQIES 180 ERSGGTVVVG PTEKKKVRIV EGGSGANRAK AVEVVEKEVV ASVQVSIIES DALLEIECLH 240 REGLLLDVMQ MLRELRIEVI GVQSSLNNGV FVAELRAKVK ENGGNGKKVS IVEVKRALNQ 300 LIPHNI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	129	ERRRRE
2	125	130	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	3e-53	bHLH family protein