PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH86058.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

Whirly

Protein Properties

Length: 141aa MW: 15450.6 Da PI: 8.4423

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH86058.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	146.2	1.3e-45	12	139	1	113
Whirly 1 svyktkaalkvkavrptfeald.........s......gnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakg 84 s+yk+kaal++ ++ p+f ld s g+ k++r+G +ll++a++ ++r+ydW+ kq+f+ls++e++++++l+ +e+ceffhdp++++ MCH86058.1 12 SIYKGKAALTITPRPPEFAPLDykvmsdcgySgcyssvGAYKITRDGYVLLQFAPSLGPRQYDWNSKQVFSLSVAEMGSVISLGGRETCEFFHDPFMGK 110 79**************98764444444441233334789****************************************************** PP Whirly 85 sneGkvrkalkvePlpdGsGlfvnlsvtn 113 s+eGkvrk+lkveP+pdGsG+f+nls + MCH86058.1 111 SDEGKVRKVLKVEPFPDGSGFFFNLSNSL 139 ***********************9765 PP

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence
GALPPRVYVG HSIYKGKAAL TITPRPPEFA PLDYKVMSDC GYSGCYSSVG AYKITRDGYV 60 LLQFAPSLGP RQYDWNSKQV FSLSVAEMGS VISLGGRETC EFFHDPFMGK SDEGKVRKVL 120 KVEPFPDGSG FFFNLSNSLS S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14410.1	5e-56	Whirly family protein