PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH86396.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 333aa    MW: 37276.8 Da    PI: 6.6731
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH86396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.35.4e-22112213199
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 f+k+lt+sd+++ g +++p+++a+ +       ++  s++l ++d +g +W+ ++ yr+k++r+++t+GW  Fv++++L +gD+vvF   ++s+++++v
  MCH86396.1 112 FIKILTQSDSNNGGGFSVPRECADLIfpeldFTDPMPSQQLYINDVHGGVWKYTHVYRGKPKRHLFTTGWTPFVNEKKLVAGDTVVFL--KNSTGNMFV 208
                 89*********************888**999444555679************************************************..779****** PP

                 EEE-S CS
          B3  95 kvfrk 99 
                 +++r+
  MCH86396.1 209 GIRRN 213
                 **996 PP
2Auxin_resp53.11.4e-18255330180
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWr 80 
                 a+++a+++++FevvY+P   +s+Fvv+++ v +a+k+ +  GmR+k+ + +e++s++ l   +G ++ vs + +       Wr
  MCH86396.1 255 AVERAEKNMAFEVVYYPTPNWSDFVVEAKVVDEAMKIGWESGMRVKLILKKEECSKKPLcqpQGAISNVSIVPN-------WR 330
                 678999**************************************************998888999999998543.......44 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MSPPQPRPVH PKIWQSCAGP AVTIPKLHSK VYYFPLGHLE HACPFPNPNT ISMIDNHRPX  60
IPCIISAVDL LSDPHTDEVF AKLILTPITD THVQEPPVGP DQEDDGENVV SFIKILTQSD  120
SNNGGGFSVP RECADLIFPE LDFTDPMPSQ QLYINDVHGG VWKYTHVYRG KPKRHLFTTG  180
WTPFVNEKKL VAGDTVVFLK NSTGNMFVGI RRNMKFAAAE AAAAQKKKEE GDEKVEGFSX  240
XXXXXXXXXX AVIEAVERAE KNMAFEVVYY PTPNWSDFVV EAKVVDEAMK IGWESGMRVK  300
LILKKEECSK KPLCQPQGAI SNVSIVPNWR MLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-74ARF family protein