PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH86472.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 463aa    MW: 51261.2 Da    PI: 5.2879
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH86472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS266.68.5e-822114631255
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+a+++++++  ++l++r ++ +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    +e l++++l++e++P+lkf++++aN
  MCH86472.1 211 LKQLLIACAKAMAENNTQDFDRLIERARNAVSINGEPIQRLGAYMVEGLVARKEASGNSIYHALKCREPE---GEELLTYMQLLFEICPYLKFGYMAAN 306
                 689******************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le +g+rLa + +++++p+ef+  +     d++ ++L++
  MCH86472.1 307 GAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGDGLEVVGKRLALMSKKFNIPVEFHG-IPVFGPDVTRDMLDI 404
                 ***************************************************999999**************************.688899********* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                 + gEalaVn+ lqlh++ desv+++++rd +L+lvksl Pkvv++veqe+++n+++F++
  MCH86472.1 405 RVGEALAVNFPLQLHHTADESVDVNNPRDGLLRLVKSLAPKVVTLVEQESNTNTTPFFN 463
                 ********************************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    
MDSQQLYSYS MTTGLPYMQS FPTIPSLQNG LLGSLKVGFG NSPDSPFSSH FDSDTLSAFS  60
DSHEHYNSGE ILSGISSSYN SSLEANHYLH RSVSSVDSLK ESLQLYSARN SSLPTNQKIR  120
HALLELENAL MAPDDNEVTT SNSSLGDSIR ETASGPRYRS WSHENQGSQY IQSQPSHVTN  180
NXXXXXXXXX XXXXRKLEEE SSLQEFPSGD LKQLLIACAK AMAENNTQDF DRLIERARNA  240
VSINGEPIQR LGAYMVEGLV ARKEASGNSI YHALKCREPE GEELLTYMQL LFEICPYLKF  300
GYMAANGAIA EACRNEDRIH IIDFQIAQGT QWMTLLQALA ARPGGAPHVR ITGIDDPVSK  360
YARGDGLEVV GKRLALMSKK FNIPVEFHGI PVFGPDVTRD MLDIRVGEAL AVNFPLQLHH  420
TADESVDVNN PRDGLLRLVK SLAPKVVTLV EQESNTNTTP FFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-108GRAS family protein