PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH86872.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 307aa    MW: 34201.4 Da    PI: 4.2573
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH86872.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07855246
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     g+W++e+ + + +a+  + ++   +W+ +a+ +g g+t++++  ++  
       MCH86872.1  8 GSWSAEDNKAFERAIIDFDKDtpdRWSNVAQAVGGGKTAEDVERHYEL 55
                     89*******************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MASMSATGSW SAEDNKAFER AIIDFDKDTP DRWSNVAQAV GGGKTAEDVE RHYELLLRDI  60
NLIESDQVPL PNYNDVELGE EGSTDNENEN EWEDRGSFDE KKKLLLEDVA NTIVQSEVLV  120
QQKHPVVTQK DDNLKVVTAG NQSTTEVPEV DNEQPTADDI VTPTPTSLVA GRHEVPDNDE  180
IEGQNFVSQE THAEPVHQLN NDDGEDIRMV PATQLVRVVN DEEFDDVVQK DLQVVKKLCA  240
DMAEANQGQQ EESFAPFVSK SRKKKNKNLA KSVGHPYHTR SKGAPLTCLY EDHLIFQHHV  300
ADNSCAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.18e-25MYB_related family protein