PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH87113.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 228aa    MW: 25766.4 Da    PI: 9.9789
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH87113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.63.3e-2544145199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g+ W++k+i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  MCH87113.1  44 FCKILTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 138
                 99*****************************8544444..48************************************************..8899999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  MCH87113.1 139 LLGIRRA 145
                 ****997 PP
2Auxin_resp76.66.4e-26170228158
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserr 58 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr
  MCH87113.1 170 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRR 228
                 79*********************************9789****************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MHADTETDEV YAQMTLQPLN PEEQKEAYHP AELGTANKQP TNYFCKILTA SDTSTHGGFS  60
VPRRAAEKVF PPLDFSQQPP AQELIARDLH GNDWKFKHIF RGQPKRHLLT TGWSVFVSAK  120
RLVAGDSVLF IWNEKNQLLL GIRRANRPQH MMPSSVLSSD SMHLGLLAAA AHAAATNSRF  180
TIFYNPRASP SEFVIPLAKY VKAVYHTRVS VGMRFRMLFE TEESSVRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.11e-143ARF family protein