PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH87223.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 201aa MW: 22446.1 Da PI: 10.3583

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH87223.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.7	5.6e-15	14	60	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ MCH87223.1 14 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYLKQLR 60 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
LRGKGGPQDE LSANHVLAER RRREKLNERF IILRSLVPFV TKMDKASILG DTIEYLKQLR 60 RKIQDLETRN RQIESERSGG TVVVGPTEKK KVRIVEGGSG ANRAKAVEVV EKEVVASVQV 120 SIIESDALLE IECLHREGLL LDVMQMLREL RIEVIGVQSS LNNGVFVAEL RAKVKENGGN 180 GKKVSIVEVK RALNQLIPHN I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	24	ERRRRE
2	20	25	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	8e-41	bHLH family protein