PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH87290.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family ARR-B
Protein Properties Length: 212aa    MW: 23896.2 Da    PI: 6.6921
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH87290.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.22.4e-25160211153
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                 kpr++W+ +LH++Fv av+qL G++kA+Pk+il++m+v+ +t+e+v+SHLQ +
  MCH87290.1 160 KPRVVWSVDLHRKFVAAVNQL-GIDKAVPKKILDMMNVENITRENVASHLQAF 211
                 79*******************.*****************************87 PP
2Myb_DNA-binding32.52e-10162210146
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqk 46 
                      r  W+ +++ ++v av+qlG +   +k+I  +m+ ++ t++++ s++q 
       MCH87290.1 162 RVVWSVDLHRKFVAAVNQLGIDkaVPKKILDMMNvENITRENVASHLQA 210
                      678********************************************96 PP
3Response_reg60.11.2e-2028428109
                   EESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  28 eaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   ++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+ +++ + ++ Ga d+l Kp+  eel +
    MCH87290.1   2 TTSQARTALTMLRENKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELKN 84 
                   6889999*****888778*******************87754.558***********************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
TTTSQARTAL TMLRENKDKF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSAYGDTKL  60
VMKGISHGAC DYLLKPVRLE ELKNIWQHVI RKKKSDPKEK NKTSKLDKTT SDSGSGLRSA  120
GAENSDENGK LTKKRKDQDE DEDEDKENGN DNEDPSAQKK PRVVWSVDLH RKFVAAVNQL  180
GIDKAVPKKI LDMMNVENIT RENVASHLQA FF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-81ARR-B family protein