PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH87527.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 395aa MW: 45663 Da PI: 9.4665

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH87527.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.5	1.8e-07	57	137	7	90
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 A +vGF+v+++ks + ++ + C + g+ + kk+ +++ + + +++C +l+ +++w ++ + eHnH++ MCH87527.1 57 AAKVGFTVVIEKSDNG-SGRRKQFFILGCERGGTYKVGKKR--LTKEDTGSRKCQCPFRLRGYFLASQEWSLSVVCGEHNHKMD 137 889******98876.34445566778**9999888..77778888888888888888888*************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MAEPSIELKP DIDKPDIVEI DIVQPAEPVI VNTAKHFFTN EKYKVRDDLI NWVRSEAAKV 60 GFTVVIEKSD NGSGRRKQFF ILGCERGGTY KVGKKRLTKE DTGSRKCQCP FRLRGYFLAS 120 QEWSLSVVCG EHNHKMDKKL EGHMIAGRLK PEEKKFVHEM TRNLVPPRNI LNTLKDRSTE 180 SKSAIKQIYN ERQRLKKFIR GTRSEMQQLL KCLEDHKYVY KIRTVGESTT VQDIFWAHPD 240 SVRLFNTFPT VLLMDSTYKT NRYKMPLFEI VGVTSTEMSY NIGFAFIANE KEENFTWVLE 300 MCLTLLKCKD IVPKVVVTDR DTALMSAVVK VFPNSTVLVC QYHISKNVRA KCKKLCSSKE 360 VKPEQLWNIV MGAWEEVMYS PSEESYVDAV VQFRK

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MAEPSIELKP DIDKPDIVEI DIVQPAEPVI VNTAKHFFTN EKYKVRDDLI NWVRSEAAKV  60
GFTVVIEKSD NGSGRRKQFF ILGCERGGTY KVGKKRLTKE DTGSRKCQCP FRLRGYFLAS  120
QEWSLSVVCG EHNHKMDKKL EGHMIAGRLK PEEKKFVHEM TRNLVPPRNI LNTLKDRSTE  180
SKSAIKQIYN ERQRLKKFIR GTRSEMQQLL KCLEDHKYVY KIRTVGESTT VQDIFWAHPD  240
SVRLFNTFPT VLLMDSTYKT NRYKMPLFEI VGVTSTEMSY NIGFAFIANE KEENFTWVLE  300
MCLTLLKCKD IVPKVVVTDR DTALMSAVVK VFPNSTVLVC QYHISKNVRA KCKKLCSSKE  360
VKPEQLWNIV MGAWEEVMYS PSEESYVDAV VQFRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-23	FAR1 family protein