PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH87598.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 221aa    MW: 24642 Da    PI: 5.1064
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH87598.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS29.87.7e-10255154
        GRAS  1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarla 54
                l+++L++ Aeav++++l la+++ + ++ la+ + +++ ++a+y++eALa+r++
  MCH87598.1  2 LQQTLMAYAEAVEQNNLPLAEEIAKPIKYLAALQNSATSKVATYLAEALAQRIH 55
                5799************************************************97 PP
2GRAS176.61.9e-5455212121282
        GRAS 121 qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvs 219
                 +G+QW  L+++La Rp+gp+ +R+Tgvg+p+s++++ l++ g++L+++A+++gv+fe++ +v+++l+dle ++L++++ E++aVn+v++lh+l +++++
  MCH87598.1  55 HGIQWQKLMRELALRPGGPHAFRLTGVGPPASDNSNHLHQAGWKLTQLAQRIGVEFEYRRVVVDSLADLEASMLELRSSETVAVNSVFELHKLNARPGA 153
                 79************************************************************************************************* PP

        GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                 le     v +++++++P++v++veqea+hn++sFl+rf+e+l+yy alfdsle++l++ ++++
  MCH87598.1 154 LER----VFSVIRQIQPEIVTIVEQEANHNGPSFLDRFTESLYYYLALFDSLESSLAEPQDNA 212
                 999....************************************************97766443 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MLQQTLMAYA EAVEQNNLPL AEEIAKPIKY LAALQNSATS KVATYLAEAL AQRIHGIQWQ  60
KLMRELALRP GGPHAFRLTG VGPPASDNSN HLHQAGWKLT QLAQRIGVEF EYRRVVVDSL  120
ADLEASMLEL RSSETVAVNS VFELHKLNAR PGALERVFSV IRQIQPEIVT IVEQEANHNG  180
PSFLDRFTES LYYYLALFDS LESSLAEPQD NAMSEVLVDG R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-81GRAS family protein