PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH87691.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 360aa    MW: 40620.1 Da    PI: 8.0613
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH87691.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.41.1e-12114184166
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHH CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWk 66 
                 f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW 
  MCH87691.1 114 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWX 184
                 89****************************986445444..8******************************6 PP
2Auxin_resp113.42.1e-37277360183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a++ a ++  FevvY+Prast+eF+vkv++v++a++++++ GmRfkm fetedss++++ +Gt+++v+  dp++Wp+S+Wr+L+
  MCH87691.1 277 AVNCAINGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVHVQDPIHWPDSPWRLLQ 360
                 577888999*************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MDSMEKTSEK CLDSQLWHAC AGAMVQMPPL NTKVFYFPQG HAEHAHGKVD FTKTRVPPLI  60
PCRISXXXXX XXXXXXXXXX XXXXXXXXXX XXDLEEDCFF GNNGLEGQEK PTSFAKTLTQ  120
SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTIIAKDMH GQCWKFRHIY RGTPRRHLLT  180
TGWXXXXXXX XXXXXXXXXX XXXXXXXXXX XXRRAKKGGI GGGITDQFSN SSSNWNRVSP  240
LFGGGSGFLC GNENRKSCVG GDDDLMRRVG SESVVEAVNC AINGRSFEVV YYPRASTPEF  300
CVKVSSVKSA MQIQWCSGMR FKMPFETEDS SRISWFMGTI SSVHVQDPIH WPDSPWRLLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-120ARF family protein