PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH88143.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 112aa MW: 12518.1 Da PI: 4.2535

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH88143.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	56.2	1e-17	2	54	49	101
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+++la++++e+ MCH88143.1 2 LPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQTQLAKAQAEI 54 7899********************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence
ELPEPQRADA VSSMVYEANA RIRDPVYGCA GAICQLQKQV SELQTQLAKA QAEIVNMHCQ 60 QANLVALICM EMSNQSSPQD HNMIINQPQP HVDMSCFLED NNFGSAWEPL WT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	5e-35	LBD family protein