PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH88663.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family ARR-B
Protein Properties Length: 240aa    MW: 27401.3 Da    PI: 8.4925
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH88663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.62.2e-26140193155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+rl Wtp+LHe+F+ av+qL G ++A+Pk+il+ m+ +gLt  hv SHLQkYR 
  MCH88663.1 140 KNRLSWTPDLHEQFLLAVNQL-GVNNAVPKEILKRMNCPGLTSGHVSSHLQKYRK 193
                 78*******************.9*******************************6 PP
2Myb_DNA-binding43.29e-14142192148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r++WT++++e+++ av+qlG +   +k I ++m+  g+t  ++ s++qky+
       MCH88663.1 142 RLSWTPDLHEQFLLAVNQLGVNnaVPKEILKRMNcPGLTSGHVSSHLQKYR 192
                      789*******************9***************************7 PP
3Response_reg29.73.4e-1158331109
                   SHHHHHHHHHHHHESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  31 dgeealellkekdpDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   + ++a+++l ++++D+il+   mp+  + ++++ +i++   klp+iv++   + + + + +  Ga  + sKp d+++  +
    MCH88663.1   5 TVSDAWNYLFNQNFDIILIEAHMPNnHTTFDFVGQITSLF-KLPVIVMSLDHSVSSVMKSIAKGACAYWSKPLDENQFKN 83 
                   66799********************99*************.********99999********************999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
ITCCTVSDAW NYLFNQNFDI ILIEAHMPNN HTTFDFVGQI TSLFKLPVIV MSLDHSVSSV  60
MKSIAKGACA YWSKPLDENQ FKNMWQHVVR NTLSQSQPHV VRKALSESHE LPHTQTLEVK  120
GHKKRGREVV DVPKQPLAKK NRLSWTPDLH EQFLLAVNQL GVNNAVPKEI LKRMNCPGLT  180
SGHVSSHLQK YRKYLNGDIN KSKLSRGYDF HGHGEICKQQ QNWTEIDDSD IFIDLSDLLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-34ARR-B family protein